feat: Add base project structure with API and web components

This commit is contained in:
Ke Sun
2025-12-02 20:28:01 +08:00
parent f3de6d6cc9
commit c1adc62ec6
817 changed files with 111226 additions and 106 deletions

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import os
import re
import tempfile
from app.core.rag.nlp import rag_tokenizer, tokenize
def chunk(filename, binary, lang, callback=None, seq2txt_mdl=None, **kwargs):
doc = {"docnm_kwd": filename, "title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename))}
doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
# is it English
eng = lang.lower() == "english" # is_english(sections)
try:
_, ext = os.path.splitext(filename)
if not ext:
raise RuntimeError("No extension detected.")
if ext not in [".da", ".wave", ".wav", ".mp3", ".aac", ".flac", ".ogg", ".aiff", ".au", ".midi", ".wma", ".realaudio", ".vqf", ".oggvorbis", ".ape"]:
raise RuntimeError(f"Extension {ext} is not supported yet.")
tmp_path = ""
with tempfile.NamedTemporaryFile(suffix=ext, delete=False) as tmpf:
tmpf.write(binary)
tmpf.flush()
tmp_path = os.path.abspath(tmpf.name)
callback(0.1, "USE Sequence2Txt LLM to transcription the audio")
ans = seq2txt_mdl.transcription(tmp_path)
callback(0.8, "Sequence2Txt LLM respond: %s ..." % ans[:32])
tokenize(doc, ans, eng)
return [doc]
except Exception as e:
callback(prog=-1, msg=str(e))
finally:
if tmp_path and os.path.exists(tmp_path):
try:
os.unlink(tmp_path)
except Exception:
pass
return []

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import logging
import re
from io import BytesIO
from app.core.rag.deepdoc.parser.utils import get_text
from . import naive
from .naive import by_plaintext, PARSERS
from app.core.rag.nlp import bullets_category, is_english,remove_contents_table, \
hierarchical_merge, make_colon_as_title, naive_merge, random_choices, tokenize_table, \
tokenize_chunks
from app.core.rag.nlp import rag_tokenizer
from app.core.rag.deepdoc.parser import PdfParser, HtmlParser
from app.core.rag.deepdoc.parser.figure_parser import vision_figure_parser_docx_wrapper
from PIL import Image
class Pdf(PdfParser):
def __call__(self, filename, binary=None, from_page=0,
to_page=100000, zoomin=3, callback=None):
from timeit import default_timer as timer
start = timer()
callback(msg="OCR started")
self.__images__(
filename if not binary else binary,
zoomin,
from_page,
to_page,
callback)
callback(msg="OCR finished ({:.2f}s)".format(timer() - start))
start = timer()
self._layouts_rec(zoomin)
callback(0.67, "Layout analysis ({:.2f}s)".format(timer() - start))
logging.debug("layouts: {}".format(timer() - start))
start = timer()
self._table_transformer_job(zoomin)
callback(0.68, "Table analysis ({:.2f}s)".format(timer() - start))
start = timer()
self._text_merge()
tbls = self._extract_table_figure(True, zoomin, True, True)
self._naive_vertical_merge()
self._filter_forpages()
self._merge_with_same_bullet()
callback(0.8, "Text extraction ({:.2f}s)".format(timer() - start))
return [(b["text"] + self._line_tag(b, zoomin), b.get("layoutno", ""))
for b in self.boxes], tbls
def chunk(filename, binary=None, from_page=0, to_page=100000,
lang="Chinese", callback=None, **kwargs):
"""
Supported file formats are docx, pdf, txt.
Since a book is long and not all the parts are useful, if it's a PDF,
please setup the page ranges for every book in order eliminate negative effects and save elapsed computing time.
"""
parser_config = kwargs.get(
"parser_config", {
"chunk_token_num": 512, "delimiter": "\n!?。;!?", "layout_recognize": "DeepDOC"})
doc = {
"docnm_kwd": filename,
"title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename))
}
doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
pdf_parser = None
sections, tbls = [], []
if re.search(r"\.docx$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
doc_parser = naive.Docx()
# TODO: table of contents need to be removed
sections, tbls = doc_parser(
filename, binary=binary, from_page=from_page, to_page=to_page)
remove_contents_table(sections, eng=is_english(
random_choices([t for t, _ in sections], k=200)))
tbls=vision_figure_parser_docx_wrapper(sections=sections,tbls=tbls,callback=callback,**kwargs)
# tbls = [((None, lns), None) for lns in tbls]
sections=[(item[0],item[1] if item[1] is not None else "") for item in sections if not isinstance(item[1], Image.Image)]
callback(0.8, "Finish parsing.")
elif re.search(r"\.pdf$", filename, re.IGNORECASE):
layout_recognizer = parser_config.get("layout_recognize", "DeepDOC")
if isinstance(layout_recognizer, bool):
layout_recognizer = "DeepDOC" if layout_recognizer else "Plain Text"
name = layout_recognizer.strip().lower()
parser = PARSERS.get(name, by_plaintext)
callback(0.1, "Start to parse.")
sections, tables, pdf_parser = parser(
filename = filename,
binary = binary,
from_page = from_page,
to_page = to_page,
lang = lang,
callback = callback,
pdf_cls = Pdf,
**kwargs
)
if not sections and not tables:
return []
if name in ["tcadp", "docling", "mineru"]:
parser_config["chunk_token_num"] = 0
callback(0.8, "Finish parsing.")
elif re.search(r"\.txt$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
txt = get_text(filename, binary)
sections = txt.split("\n")
sections = [(line, "") for line in sections if line]
remove_contents_table(sections, eng=is_english(
random_choices([t for t, _ in sections], k=200)))
callback(0.8, "Finish parsing.")
elif re.search(r"\.(htm|html)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
sections = HtmlParser()(filename, binary)
sections = [(line, "") for line in sections if line]
remove_contents_table(sections, eng=is_english(
random_choices([t for t, _ in sections], k=200)))
callback(0.8, "Finish parsing.")
elif re.search(r"\.doc$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
binary = BytesIO(binary)
doc_parsed = parser.from_buffer(binary)
sections = doc_parsed['content'].split('\n')
sections = [(line, "") for line in sections if line]
remove_contents_table(sections, eng=is_english(
random_choices([t for t, _ in sections], k=200)))
callback(0.8, "Finish parsing.")
else:
raise NotImplementedError(
"file type not supported yet(doc, docx, pdf, txt supported)")
make_colon_as_title(sections)
bull = bullets_category(
[t for t in random_choices([t for t, _ in sections], k=100)])
if bull >= 0:
chunks = ["\n".join(ck)
for ck in hierarchical_merge(bull, sections, 5)]
else:
sections = [s.split("@") for s, _ in sections]
sections = [(pr[0], "@" + pr[1]) if len(pr) == 2 else (pr[0], '') for pr in sections ]
chunks = naive_merge(
sections, kwargs.get(
"chunk_token_num", 256), kwargs.get(
"delimer", "\n。;!?"))
# is it English
# is_english(random_choices([t for t, _ in sections], k=218))
eng = lang.lower() == "english"
res = tokenize_table(tbls, doc, eng)
res.extend(tokenize_chunks(chunks, doc, eng, pdf_parser))
return res
if __name__ == "__main__":
import sys
def dummy(prog=None, msg=""):
pass
chunk(sys.argv[1], from_page=1, to_page=10, callback=dummy)

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import logging
import re
from io import BytesIO
from docx import Document
from app.core.rag.common.constants import ParserType
from app.core.rag.deepdoc.parser.utils import get_text
from app.core.rag.nlp import bullets_category, remove_contents_table, \
make_colon_as_title, tokenize_chunks, docx_question_level, tree_merge
from app.core.rag.nlp import rag_tokenizer, Node
from app.core.rag.deepdoc.parser import PdfParser, DocxParser, HtmlParser
from app.core.rag.app.naive import by_plaintext, PARSERS
class Docx(DocxParser):
def __init__(self):
pass
def __clean(self, line):
line = re.sub(r"\u3000", " ", line).strip()
return line
def old_call(self, filename, binary=None, from_page=0, to_page=100000):
self.doc = Document(
filename) if not binary else Document(BytesIO(binary))
pn = 0
lines = []
for p in self.doc.paragraphs:
if pn > to_page:
break
if from_page <= pn < to_page and p.text.strip():
lines.append(self.__clean(p.text))
for run in p.runs:
if 'lastRenderedPageBreak' in run._element.xml:
pn += 1
continue
if 'w:br' in run._element.xml and 'type="page"' in run._element.xml:
pn += 1
return [line for line in lines if line]
def __call__(self, filename, binary=None, from_page=0, to_page=100000):
self.doc = Document(
filename) if not binary else Document(BytesIO(binary))
pn = 0
lines = []
level_set = set()
bull = bullets_category([p.text for p in self.doc.paragraphs])
for p in self.doc.paragraphs:
if pn > to_page:
break
question_level, p_text = docx_question_level(p, bull)
if not p_text.strip("\n"):
continue
lines.append((question_level, p_text))
level_set.add(question_level)
for run in p.runs:
if 'lastRenderedPageBreak' in run._element.xml:
pn += 1
continue
if 'w:br' in run._element.xml and 'type="page"' in run._element.xml:
pn += 1
sorted_levels = sorted(level_set)
h2_level = sorted_levels[1] if len(sorted_levels) > 1 else 1
h2_level = sorted_levels[-2] if h2_level == sorted_levels[-1] and len(sorted_levels) > 2 else h2_level
root = Node(level=0, depth=h2_level, texts=[])
root.build_tree(lines)
return [element for element in root.get_tree() if element]
def __str__(self) -> str:
return f'''
question:{self.question},
answer:{self.answer},
level:{self.level},
childs:{self.childs}
'''
class Pdf(PdfParser):
def __init__(self):
self.model_speciess = ParserType.LAWS.value
super().__init__()
def __call__(self, filename, binary=None, from_page=0,
to_page=100000, zoomin=3, callback=None):
from timeit import default_timer as timer
start = timer()
callback(msg="OCR started")
self.__images__(
filename if not binary else binary,
zoomin,
from_page,
to_page,
callback
)
callback(msg="OCR finished ({:.2f}s)".format(timer() - start))
start = timer()
self._layouts_rec(zoomin)
callback(0.67, "Layout analysis ({:.2f}s)".format(timer() - start))
logging.debug("layouts:".format(
))
self._naive_vertical_merge()
callback(0.8, "Text extraction ({:.2f}s)".format(timer() - start))
return [(b["text"], self._line_tag(b, zoomin))
for b in self.boxes], None
def chunk(filename, binary=None, from_page=0, to_page=100000,
lang="Chinese", callback=None, **kwargs):
"""
Supported file formats are docx, pdf, txt.
"""
parser_config = kwargs.get(
"parser_config", {
"chunk_token_num": 512, "delimiter": "\n!?。;!?", "layout_recognize": "DeepDOC"})
doc = {
"docnm_kwd": filename,
"title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename))
}
doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
pdf_parser = None
sections = []
# is it English
eng = lang.lower() == "english" # is_english(sections)
if re.search(r"\.docx$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
chunks = Docx()(filename, binary)
callback(0.7, "Finish parsing.")
return tokenize_chunks(chunks, doc, eng, None)
elif re.search(r"\.pdf$", filename, re.IGNORECASE):
layout_recognizer = parser_config.get("layout_recognize", "DeepDOC")
if isinstance(layout_recognizer, bool):
layout_recognizer = "DeepDOC" if layout_recognizer else "Plain Text"
name = layout_recognizer.strip().lower()
parser = PARSERS.get(name, by_plaintext)
callback(0.1, "Start to parse.")
raw_sections, tables, pdf_parser = parser(
filename = filename,
binary = binary,
from_page = from_page,
to_page = to_page,
lang = lang,
callback = callback,
pdf_cls = Pdf,
**kwargs
)
if not raw_sections and not tables:
return []
if name in ["tcadp", "docling", "mineru"]:
parser_config["chunk_token_num"] = 0
for txt, poss in raw_sections:
sections.append(txt + poss)
callback(0.8, "Finish parsing.")
elif re.search(r"\.(txt|md|markdown|mdx)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
txt = get_text(filename, binary)
sections = txt.split("\n")
sections = [s for s in sections if s]
callback(0.8, "Finish parsing.")
elif re.search(r"\.(htm|html)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
sections = HtmlParser()(filename, binary)
sections = [s for s in sections if s]
callback(0.8, "Finish parsing.")
elif re.search(r"\.doc$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
binary = BytesIO(binary)
doc_parsed = parser.from_buffer(binary)
sections = doc_parsed['content'].split('\n')
sections = [s for s in sections if s]
callback(0.8, "Finish parsing.")
else:
raise NotImplementedError(
"file type not supported yet(doc, docx, pdf, txt supported)")
# Remove 'Contents' part
remove_contents_table(sections, eng)
make_colon_as_title(sections)
bull = bullets_category(sections)
res = tree_merge(bull, sections, 2)
if not res:
callback(0.99, "No chunk parsed out.")
return tokenize_chunks(res, doc, eng, pdf_parser)
# chunks = hierarchical_merge(bull, sections, 5)
# return tokenize_chunks(["\n".join(ck)for ck in chunks], doc, eng, pdf_parser)
if __name__ == "__main__":
import sys
def dummy(prog=None, msg=""):
pass
chunk(sys.argv[1], callback=dummy)

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import logging
from email import policy
from email.parser import BytesParser
from .naive import chunk as naive_chunk
import re
from app.core.rag.nlp import rag_tokenizer, naive_merge, tokenize_chunks
from app.core.rag.deepdoc.parser import HtmlParser, TxtParser
from timeit import default_timer as timer
import io
def chunk(
filename,
binary=None,
from_page=0,
to_page=100000,
lang="Chinese",
callback=None,
**kwargs,
):
"""
Only eml is supported
"""
eng = lang.lower() == "english" # is_english(cks)
parser_config = kwargs.get(
"parser_config",
{"chunk_token_num": 512, "delimiter": "\n!?。;!?", "layout_recognize": "DeepDOC"},
)
doc = {
"docnm_kwd": filename,
"title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename)),
}
doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
main_res = []
attachment_res = []
if binary:
msg = BytesParser(policy=policy.default).parse(io.BytesIO(binary))
else:
msg = BytesParser(policy=policy.default).parse(open(filename, "rb"))
text_txt, html_txt = [], []
# get the email header info
for header, value in msg.items():
text_txt.append(f"{header}: {value}")
# get the email main info
def _add_content(msg, content_type):
def _decode_payload(payload, charset, target_list):
try:
target_list.append(payload.decode(charset))
except (UnicodeDecodeError, LookupError):
for enc in ["utf-8", "gb2312", "gbk", "gb18030", "latin1"]:
try:
target_list.append(payload.decode(enc))
break
except UnicodeDecodeError:
continue
else:
target_list.append(payload.decode("utf-8", errors="ignore"))
if content_type == "text/plain":
payload = msg.get_payload(decode=True)
charset = msg.get_content_charset() or "utf-8"
_decode_payload(payload, charset, text_txt)
elif content_type == "text/html":
payload = msg.get_payload(decode=True)
charset = msg.get_content_charset() or "utf-8"
_decode_payload(payload, charset, html_txt)
elif "multipart" in content_type:
if msg.is_multipart():
for part in msg.iter_parts():
_add_content(part, part.get_content_type())
_add_content(msg, msg.get_content_type())
sections = TxtParser.parser_txt("\n".join(text_txt)) + [
(line, "") for line in HtmlParser.parser_txt("\n".join(html_txt), chunk_token_num=parser_config["chunk_token_num"]) if line
]
st = timer()
chunks = naive_merge(
sections,
int(parser_config.get("chunk_token_num", 128)),
parser_config.get("delimiter", "\n!?。;!?"),
)
main_res.extend(tokenize_chunks(chunks, doc, eng, None))
logging.debug("naive_merge({}): {}".format(filename, timer() - st))
# get the attachment info
for part in msg.iter_attachments():
content_disposition = part.get("Content-Disposition")
if content_disposition:
dispositions = content_disposition.strip().split(";")
if dispositions[0].lower() == "attachment":
filename = part.get_filename()
payload = part.get_payload(decode=True)
try:
attachment_res.extend(
naive_chunk(filename, payload, callback=callback, **kwargs)
)
except Exception:
pass
return main_res + attachment_res
if __name__ == "__main__":
import sys
def dummy(prog=None, msg=""):
pass
chunk(sys.argv[1], callback=dummy)

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import logging
import copy
import re
from app.core.rag.common.constants import ParserType
from io import BytesIO
from app.core.rag.nlp import rag_tokenizer, tokenize, tokenize_table, bullets_category, title_frequency, tokenize_chunks, docx_question_level
from app.core.rag.common.token_utils import num_tokens_from_string
from app.core.rag.deepdoc.parser import PdfParser, DocxParser
from app.core.rag.deepdoc.parser.figure_parser import vision_figure_parser_pdf_wrapper,vision_figure_parser_docx_wrapper
from docx import Document
from PIL import Image
from .naive import by_plaintext, PARSERS
class Pdf(PdfParser):
def __init__(self):
self.model_speciess = ParserType.MANUAL.value
super().__init__()
def __call__(self, filename, binary=None, from_page=0,
to_page=100000, zoomin=3, callback=None):
from timeit import default_timer as timer
start = timer()
callback(msg="OCR started")
self.__images__(
filename if not binary else binary,
zoomin,
from_page,
to_page,
callback
)
callback(msg="OCR finished ({:.2f}s)".format(timer() - start))
logging.debug("OCR: {}".format(timer() - start))
start = timer()
self._layouts_rec(zoomin)
callback(0.65, "Layout analysis ({:.2f}s)".format(timer() - start))
logging.debug("layouts: {}".format(timer() - start))
start = timer()
self._table_transformer_job(zoomin)
callback(0.67, "Table analysis ({:.2f}s)".format(timer() - start))
start = timer()
self._text_merge()
tbls = self._extract_table_figure(True, zoomin, True, True)
self._concat_downward()
self._filter_forpages()
callback(0.68, "Text merged ({:.2f}s)".format(timer() - start))
# clean mess
for b in self.boxes:
b["text"] = re.sub(r"([\t  ]|\u3000){2,}", " ", b["text"].strip())
return [(b["text"], b.get("layoutno", ""), self.get_position(b, zoomin))
for i, b in enumerate(self.boxes)], tbls
class Docx(DocxParser):
def __init__(self):
pass
def get_picture(self, document, paragraph):
img = paragraph._element.xpath('.//pic:pic')
if not img:
return None
try:
img = img[0]
embed = img.xpath('.//a:blip/@r:embed')[0]
related_part = document.part.related_parts[embed]
image = related_part.image
if image is not None:
image = Image.open(BytesIO(image.blob))
return image
elif related_part.blob is not None:
image = Image.open(BytesIO(related_part.blob))
return image
else:
return None
except Exception:
return None
def concat_img(self, img1, img2):
if img1 and not img2:
return img1
if not img1 and img2:
return img2
if not img1 and not img2:
return None
width1, height1 = img1.size
width2, height2 = img2.size
new_width = max(width1, width2)
new_height = height1 + height2
new_image = Image.new('RGB', (new_width, new_height))
new_image.paste(img1, (0, 0))
new_image.paste(img2, (0, height1))
return new_image
def __call__(self, filename, binary=None, from_page=0, to_page=100000, callback=None):
self.doc = Document(
filename) if not binary else Document(BytesIO(binary))
pn = 0
last_answer, last_image = "", None
question_stack, level_stack = [], []
ti_list = []
for p in self.doc.paragraphs:
if pn > to_page:
break
question_level, p_text = 0, ''
if from_page <= pn < to_page and p.text.strip():
question_level, p_text = docx_question_level(p)
if not question_level or question_level > 6: # not a question
last_answer = f'{last_answer}\n{p_text}'
current_image = self.get_picture(self.doc, p)
last_image = self.concat_img(last_image, current_image)
else: # is a question
if last_answer or last_image:
sum_question = '\n'.join(question_stack)
if sum_question:
ti_list.append((f'{sum_question}\n{last_answer}', last_image))
last_answer, last_image = '', None
i = question_level
while question_stack and i <= level_stack[-1]:
question_stack.pop()
level_stack.pop()
question_stack.append(p_text)
level_stack.append(question_level)
for run in p.runs:
if 'lastRenderedPageBreak' in run._element.xml:
pn += 1
continue
if 'w:br' in run._element.xml and 'type="page"' in run._element.xml:
pn += 1
if last_answer:
sum_question = '\n'.join(question_stack)
if sum_question:
ti_list.append((f'{sum_question}\n{last_answer}', last_image))
tbls = []
for tb in self.doc.tables:
html= "<table>"
for r in tb.rows:
html += "<tr>"
i = 0
while i < len(r.cells):
span = 1
c = r.cells[i]
for j in range(i+1, len(r.cells)):
if c.text == r.cells[j].text:
span += 1
i = j
else:
break
i += 1
html += f"<td>{c.text}</td>" if span == 1 else f"<td colspan='{span}'>{c.text}</td>"
html += "</tr>"
html += "</table>"
tbls.append(((None, html), ""))
return ti_list, tbls
def chunk(filename, binary=None, from_page=0, to_page=100000,
lang="Chinese", callback=None, **kwargs):
"""
Only pdf is supported.
"""
parser_config = kwargs.get(
"parser_config", {
"chunk_token_num": 512, "delimiter": "\n!?。;!?", "layout_recognize": "DeepDOC"})
pdf_parser = None
doc = {
"docnm_kwd": filename
}
doc["title_tks"] = rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", doc["docnm_kwd"]))
doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
# is it English
eng = lang.lower() == "english" # pdf_parser.is_english
if re.search(r"\.pdf$", filename, re.IGNORECASE):
layout_recognizer = parser_config.get("layout_recognize", "DeepDOC")
if isinstance(layout_recognizer, bool):
layout_recognizer = "DeepDOC" if layout_recognizer else "Plain Text"
name = layout_recognizer.strip().lower()
pdf_parser = PARSERS.get(name, by_plaintext)
callback(0.1, "Start to parse.")
sections, tbls, pdf_parser = pdf_parser(
filename = filename,
binary = binary,
from_page = from_page,
to_page = to_page,
lang = lang,
callback = callback,
pdf_cls = Pdf,
**kwargs
)
if not sections and not tbls:
return []
if name in ["tcadp", "docling", "mineru"]:
parser_config["chunk_token_num"] = 0
callback(0.8, "Finish parsing.")
if len(sections) > 0 and len(pdf_parser.outlines) / len(sections) > 0.03:
max_lvl = max([lvl for _, lvl in pdf_parser.outlines])
most_level = max(0, max_lvl - 1)
levels = []
for txt, _, _ in sections:
for t, lvl in pdf_parser.outlines:
tks = set([t[i] + t[i + 1] for i in range(len(t) - 1)])
tks_ = set([txt[i] + txt[i + 1]
for i in range(min(len(t), len(txt) - 1))])
if len(set(tks & tks_)) / max([len(tks), len(tks_), 1]) > 0.8:
levels.append(lvl)
break
else:
levels.append(max_lvl + 1)
else:
bull = bullets_category([txt for txt, _, _ in sections])
most_level, levels = title_frequency(
bull, [(txt, lvl) for txt, lvl, _ in sections])
assert len(sections) == len(levels)
sec_ids = []
sid = 0
for i, lvl in enumerate(levels):
if lvl <= most_level and i > 0 and lvl != levels[i - 1]:
sid += 1
sec_ids.append(sid)
sections = [(txt, sec_ids[i], poss)
for i, (txt, _, poss) in enumerate(sections)]
for (img, rows), poss in tbls:
if not rows:
continue
sections.append((rows if isinstance(rows, str) else rows[0], -1,
[(p[0] + 1 - from_page, p[1], p[2], p[3], p[4]) for p in poss]))
def tag(pn, left, right, top, bottom):
if pn + left + right + top + bottom == 0:
return ""
return "@@{}\t{:.1f}\t{:.1f}\t{:.1f}\t{:.1f}##" \
.format(pn, left, right, top, bottom)
chunks = []
last_sid = -2
tk_cnt = 0
for txt, sec_id, poss in sorted(sections, key=lambda x: (
x[-1][0][0], x[-1][0][3], x[-1][0][1])):
poss = "\t".join([tag(*pos) for pos in poss])
if tk_cnt < 32 or (tk_cnt < 1024 and (sec_id == last_sid or sec_id == -1)):
if chunks:
chunks[-1] += "\n" + txt + poss
tk_cnt += num_tokens_from_string(txt)
continue
chunks.append(txt + poss)
tk_cnt = num_tokens_from_string(txt)
if sec_id > -1:
last_sid = sec_id
tbls=vision_figure_parser_pdf_wrapper(tbls=tbls,callback=callback,**kwargs)
res = tokenize_table(tbls, doc, eng)
res.extend(tokenize_chunks(chunks, doc, eng, pdf_parser))
return res
elif re.search(r"\.docx?$", filename, re.IGNORECASE):
docx_parser = Docx()
ti_list, tbls = docx_parser(filename, binary,
from_page=0, to_page=10000, callback=callback)
tbls=vision_figure_parser_docx_wrapper(sections=ti_list,tbls=tbls,callback=callback,**kwargs)
res = tokenize_table(tbls, doc, eng)
for text, image in ti_list:
d = copy.deepcopy(doc)
if image:
d['image'] = image
d["doc_type_kwd"] = "image"
tokenize(d, text, eng)
res.append(d)
return res
else:
raise NotImplementedError("file type not supported yet(pdf and docx supported)")
if __name__ == "__main__":
import sys
def dummy(prog=None, msg=""):
pass
chunk(sys.argv[1], callback=dummy)

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import logging
import re
import os
from functools import reduce
from io import BytesIO
from timeit import default_timer as timer
from docx import Document
from docx.image.exceptions import InvalidImageStreamError, UnexpectedEndOfFileError, UnrecognizedImageError
from docx.opc.pkgreader import _SerializedRelationships, _SerializedRelationship
from docx.opc.oxml import parse_xml
from markdown import markdown
from PIL import Image
import copy
from app.core.rag.llm.cv_model import AzureGptV4, QWenCV
from app.core.rag.common.file_utils import get_project_base_directory
from app.core.rag.utils.file_utils import extract_embed_file, extract_links_from_pdf, extract_links_from_docx, extract_html
from app.core.rag.deepdoc.parser import DocxParser, ExcelParser, HtmlParser, JsonParser, MarkdownElementExtractor, MarkdownParser, PdfParser, TxtParser
from app.core.rag.deepdoc.parser.figure_parser import VisionFigureParser,vision_figure_parser_docx_wrapper,vision_figure_parser_pdf_wrapper
from app.core.rag.deepdoc.parser.pdf_parser import PlainParser, VisionParser
from app.core.rag.deepdoc.parser.mineru_parser import MinerUParser
from app.core.rag.nlp import concat_img, find_codec, naive_merge, naive_merge_with_images, naive_merge_docx, tokenize, rag_tokenizer, tokenize_chunks, tokenize_chunks_with_images, tokenize_table
def by_deepdoc(filename, binary=None, from_page=0, to_page=100000, lang="Chinese", callback=None, vision_model=None, pdf_cls = None ,**kwargs):
callback = callback
binary = binary
pdf_parser = pdf_cls() if pdf_cls else Pdf()
sections, tables = pdf_parser(
filename if not binary else binary,
from_page=from_page,
to_page=to_page,
callback=callback
)
tables = vision_figure_parser_pdf_wrapper(tbls=tables,
callback=callback,
vision_model=vision_model,
**kwargs)
return sections, tables, pdf_parser
def by_mineru(filename, binary=None, from_page=0, to_page=100000, lang="Chinese", callback=None, vision_model=None, pdf_cls = None ,**kwargs):
mineru_executable = os.environ.get("MINERU_EXECUTABLE", "mineru")
mineru_api = os.environ.get("MINERU_APISERVER", "http://host.docker.internal:9987")
pdf_parser = MinerUParser(mineru_path=mineru_executable, mineru_api=mineru_api)
if not pdf_parser.check_installation():
callback(-1, "MinerU not found.")
return None, None, pdf_parser
sections, tables = pdf_parser.parse_pdf(
filepath=filename,
binary=binary,
callback=callback,
output_dir=os.environ.get("MINERU_OUTPUT_DIR", ""),
backend=os.environ.get("MINERU_BACKEND", "pipeline"),
delete_output=bool(int(os.environ.get("MINERU_DELETE_OUTPUT", 1))),
)
return sections, tables, pdf_parser
def by_textln(filename, binary=None, from_page=0, to_page=100000, lang="Chinese", callback=None, vision_model=None, pdf_cls = None ,**kwargs):
textln_app_id = os.environ.get("TEXTLN_APP_ID", "")
textln_secret_code = os.environ.get("TEXTLN_SECRET_CODE", "")
textln_api = os.environ.get("TEXTLN_APISERVER", "https://api.textin.com/ai/service/v1/pdf_to_markdown")
pdf_parser = MinerUParser(mineru_path=textln_app_id, mineru_api=textln_api)
if not pdf_parser.check_installation():
callback(-1, "MinerU not found.")
return None, None, pdf_parser
sections, tables = pdf_parser.parse_pdf(
filepath=filename,
binary=binary,
callback=callback,
output_dir=os.environ.get("MINERU_OUTPUT_DIR", ""),
backend=os.environ.get("MINERU_BACKEND", "pipeline"),
delete_output=bool(int(os.environ.get("MINERU_DELETE_OUTPUT", 1))),
)
return sections, tables, pdf_parser
def by_plaintext(filename, binary=None, from_page=0, to_page=100000, callback=None, vision_model=None, **kwargs):
if kwargs.get("layout_recognizer", "") == "Plain Text":
pdf_parser = PlainParser()
else:
pdf_parser = VisionParser(vision_model=vision_model, **kwargs)
sections, tables = pdf_parser(
filename if not binary else binary,
from_page=from_page,
to_page=to_page,
callback=callback
)
return sections, tables, pdf_parser
PARSERS = {
"deepdoc": by_deepdoc,
"mineru": by_mineru,
"textln": by_textln,
"plaintext": by_plaintext, # default
}
class Docx(DocxParser):
def __init__(self):
pass
def get_picture(self, document, paragraph):
imgs = paragraph._element.xpath('.//pic:pic')
if not imgs:
return None
res_img = None
for img in imgs:
embed = img.xpath('.//a:blip/@r:embed')
if not embed:
continue
embed = embed[0]
try:
related_part = document.part.related_parts[embed]
image_blob = related_part.image.blob
except UnrecognizedImageError:
logging.info("Unrecognized image format. Skipping image.")
continue
except UnexpectedEndOfFileError:
logging.info("EOF was unexpectedly encountered while reading an image stream. Skipping image.")
continue
except InvalidImageStreamError:
logging.info("The recognized image stream appears to be corrupted. Skipping image.")
continue
except UnicodeDecodeError:
logging.info("The recognized image stream appears to be corrupted. Skipping image.")
continue
except Exception:
logging.info("The recognized image stream appears to be corrupted. Skipping image.")
continue
try:
image = Image.open(BytesIO(image_blob)).convert('RGB')
if res_img is None:
res_img = image
else:
res_img = concat_img(res_img, image)
except Exception:
continue
return res_img
def __clean(self, line):
line = re.sub(r"\u3000", " ", line).strip()
return line
def __get_nearest_title(self, table_index, filename):
"""Get the hierarchical title structure before the table"""
import re
from docx.text.paragraph import Paragraph
titles = []
blocks = []
# Get document name from filename parameter
doc_name = re.sub(r"\.[a-zA-Z]+$", "", filename)
if not doc_name:
doc_name = "Untitled Document"
# Collect all document blocks while maintaining document order
try:
# Iterate through all paragraphs and tables in document order
for i, block in enumerate(self.doc._element.body):
if block.tag.endswith('p'): # Paragraph
p = Paragraph(block, self.doc)
blocks.append(('p', i, p))
elif block.tag.endswith('tbl'): # Table
blocks.append(('t', i, None)) # Table object will be retrieved later
except Exception as e:
logging.error(f"Error collecting blocks: {e}")
return ""
# Find the target table position
target_table_pos = -1
table_count = 0
for i, (block_type, pos, _) in enumerate(blocks):
if block_type == 't':
if table_count == table_index:
target_table_pos = pos
break
table_count += 1
if target_table_pos == -1:
return "" # Target table not found
# Find the nearest heading paragraph in reverse order
nearest_title = None
for i in range(len(blocks)-1, -1, -1):
block_type, pos, block = blocks[i]
if pos >= target_table_pos: # Skip blocks after the table
continue
if block_type != 'p':
continue
if block.style and block.style.name and re.search(r"Heading\s*(\d+)", block.style.name, re.I):
try:
level_match = re.search(r"(\d+)", block.style.name)
if level_match:
level = int(level_match.group(1))
if level <= 7: # Support up to 7 heading levels
title_text = block.text.strip()
if title_text: # Avoid empty titles
nearest_title = (level, title_text)
break
except Exception as e:
logging.error(f"Error parsing heading level: {e}")
if nearest_title:
# Add current title
titles.append(nearest_title)
current_level = nearest_title[0]
# Find all parent headings, allowing cross-level search
while current_level > 1:
found = False
for i in range(len(blocks)-1, -1, -1):
block_type, pos, block = blocks[i]
if pos >= target_table_pos: # Skip blocks after the table
continue
if block_type != 'p':
continue
if block.style and re.search(r"Heading\s*(\d+)", block.style.name, re.I):
try:
level_match = re.search(r"(\d+)", block.style.name)
if level_match:
level = int(level_match.group(1))
# Find any heading with a higher level
if level < current_level:
title_text = block.text.strip()
if title_text: # Avoid empty titles
titles.append((level, title_text))
current_level = level
found = True
break
except Exception as e:
logging.error(f"Error parsing parent heading: {e}")
if not found: # Break if no parent heading is found
break
# Sort by level (ascending, from highest to lowest)
titles.sort(key=lambda x: x[0])
# Organize titles (from highest to lowest)
hierarchy = [doc_name] + [t[1] for t in titles]
return " > ".join(hierarchy)
return ""
def __call__(self, filename, binary=None, from_page=0, to_page=100000):
self.doc = Document(
filename) if not binary else Document(BytesIO(binary))
pn = 0
lines = []
last_image = None
for p in self.doc.paragraphs:
if pn > to_page:
break
if from_page <= pn < to_page:
if p.text.strip():
if p.style and p.style.name == 'Caption':
former_image = None
if lines and lines[-1][1] and lines[-1][2] != 'Caption':
former_image = lines[-1][1].pop()
elif last_image:
former_image = last_image
last_image = None
lines.append((self.__clean(p.text), [former_image], p.style.name))
else:
current_image = self.get_picture(self.doc, p)
image_list = [current_image]
if last_image:
image_list.insert(0, last_image)
last_image = None
lines.append((self.__clean(p.text), image_list, p.style.name if p.style else ""))
else:
if current_image := self.get_picture(self.doc, p):
if lines:
lines[-1][1].append(current_image)
else:
last_image = current_image
for run in p.runs:
if 'lastRenderedPageBreak' in run._element.xml:
pn += 1
continue
if 'w:br' in run._element.xml and 'type="page"' in run._element.xml:
pn += 1
new_line = [(line[0], reduce(concat_img, line[1]) if line[1] else None) for line in lines]
tbls = []
for i, tb in enumerate(self.doc.tables):
title = self.__get_nearest_title(i, filename)
html = "<table>"
if title:
html += f"<caption>Table Location: {title}</caption>"
for r in tb.rows:
html += "<tr>"
i = 0
try:
while i < len(r.cells):
span = 1
c = r.cells[i]
for j in range(i + 1, len(r.cells)):
if c.text == r.cells[j].text:
span += 1
i = j
else:
break
i += 1
html += f"<td>{c.text}</td>" if span == 1 else f"<td colspan='{span}'>{c.text}</td>"
except Exception as e:
logging.warning(f"Error parsing table, ignore: {e}")
html += "</tr>"
html += "</table>"
tbls.append(((None, html), ""))
return new_line, tbls
def to_markdown(self, filename=None, binary=None, inline_images: bool = True):
"""
This function uses mammoth, licensed under the BSD 2-Clause License.
"""
import base64
import uuid
import mammoth
from markdownify import markdownify
docx_file = BytesIO(binary) if binary else open(filename, "rb")
def _convert_image_to_base64(image):
try:
with image.open() as image_file:
image_bytes = image_file.read()
encoded = base64.b64encode(image_bytes).decode("utf-8")
base64_url = f"data:{image.content_type};base64,{encoded}"
alt_name = "image"
alt_name = f"img_{uuid.uuid4().hex[:8]}"
return {"src": base64_url, "alt": alt_name}
except Exception as e:
logging.warning(f"Failed to convert image to base64: {e}")
return {"src": "", "alt": "image"}
try:
if inline_images:
result = mammoth.convert_to_html(docx_file, convert_image=mammoth.images.img_element(_convert_image_to_base64))
else:
result = mammoth.convert_to_html(docx_file)
html = result.value
markdown_text = markdownify(html)
return markdown_text
finally:
if not binary:
docx_file.close()
class Pdf(PdfParser):
def __init__(self):
super().__init__()
def __call__(self, filename, binary=None, from_page=0,
to_page=100000, zoomin=3, callback=None, separate_tables_figures=False):
start = timer()
first_start = start
callback(msg="OCR started")
self.__images__(
filename if not binary else binary,
zoomin,
from_page,
to_page,
callback
)
callback(msg="OCR finished ({:.2f}s)".format(timer() - start))
logging.info("OCR({}~{}): {:.2f}s".format(from_page, to_page, timer() - start))
start = timer()
self._layouts_rec(zoomin)
callback(0.63, "Layout analysis ({:.2f}s)".format(timer() - start))
start = timer()
self._table_transformer_job(zoomin)
callback(0.65, "Table analysis ({:.2f}s)".format(timer() - start))
start = timer()
self._text_merge(zoomin=zoomin)
callback(0.67, "Text merged ({:.2f}s)".format(timer() - start))
if separate_tables_figures:
tbls, figures = self._extract_table_figure(True, zoomin, True, True, True)
self._concat_downward()
logging.info("layouts cost: {}s".format(timer() - first_start))
return [(b["text"], self._line_tag(b, zoomin)) for b in self.boxes], tbls, figures
else:
tbls = self._extract_table_figure(True, zoomin, True, True)
self._naive_vertical_merge()
self._concat_downward()
self._final_reading_order_merge()
# self._filter_forpages()
logging.info("layouts cost: {}s".format(timer() - first_start))
return [(b["text"], self._line_tag(b, zoomin)) for b in self.boxes], tbls
class Markdown(MarkdownParser):
def md_to_html(self, sections):
if not sections:
return []
if isinstance(sections, type("")):
text = sections
elif isinstance(sections[0], type("")):
text = sections[0]
else:
return []
from bs4 import BeautifulSoup
html_content = markdown(text)
soup = BeautifulSoup(html_content, 'html.parser')
return soup
def get_picture_urls(self, soup):
if soup:
return [img.get('src') for img in soup.find_all('img') if img.get('src')]
return []
def get_hyperlink_urls(self, soup):
if soup:
return set([a.get('href') for a in soup.find_all('a') if a.get('href')])
return []
def get_pictures(self, text):
"""Download and open all images from markdown text."""
import requests
soup = self.md_to_html(text)
image_urls = self.get_picture_urls(soup)
images = []
# Find all image URLs in text
for url in image_urls:
if not url:
continue
try:
# check if the url is a local file or a remote URL
if url.startswith(('http://', 'https://')):
# For remote URLs, download the image
response = requests.get(url, stream=True, timeout=30)
if response.status_code == 200 and response.headers['Content-Type'] and response.headers['Content-Type'].startswith('image/'):
img = Image.open(BytesIO(response.content)).convert('RGB')
images.append(img)
else:
# For local file paths, open the image directly
from pathlib import Path
local_path = Path(url)
if not local_path.exists():
logging.warning(f"Local image file not found: {url}")
continue
img = Image.open(url).convert('RGB')
images.append(img)
except Exception as e:
logging.error(f"Failed to download/open image from {url}: {e}")
continue
return images if images else None
def __call__(self, filename, binary=None, separate_tables=True,delimiter=None):
if binary:
encoding = find_codec(binary)
txt = binary.decode(encoding, errors="ignore")
else:
with open(filename, "r") as f:
txt = f.read()
remainder, tables = self.extract_tables_and_remainder(f'{txt}\n', separate_tables=separate_tables)
# To eliminate duplicate tables in chunking result, uncomment code below and set separate_tables to True in line 410.
# extractor = MarkdownElementExtractor(remainder)
extractor = MarkdownElementExtractor(txt)
element_sections = extractor.extract_elements(delimiter)
sections = [(element, "") for element in element_sections]
tbls = []
for table in tables:
tbls.append(((None, markdown(table, extensions=['markdown.extensions.tables'])), ""))
return sections, tbls
def load_from_xml_v2(baseURI, rels_item_xml):
"""
Return |_SerializedRelationships| instance loaded with the
relationships contained in *rels_item_xml*. Returns an empty
collection if *rels_item_xml* is |None|.
"""
srels = _SerializedRelationships()
if rels_item_xml is not None:
rels_elm = parse_xml(rels_item_xml)
for rel_elm in rels_elm.Relationship_lst:
if rel_elm.target_ref in ('../NULL', 'NULL'):
continue
srels._srels.append(_SerializedRelationship(baseURI, rel_elm))
return srels
def chunk(filename, binary=None, from_page=0, to_page=100000,
lang="Chinese", callback=None, vision_model=None, **kwargs):
"""
Supported file formats are docx, doc, pdf, excel, txt, markdown, html, json.
This method apply the naive ways to chunk files.
Successive text will be sliced into pieces using 'delimiter'.
Next, these successive pieces are merge into chunks whose token number is no more than 'Max token number'.
"""
urls = set()
url_res = []
is_english = lang.lower() == "english" # is_english(cks)
parser_config = kwargs.get(
"parser_config", {
"layout_recognize": "DeepDOC", "chunk_token_num": 512, "delimiter": "\n!?。;!?", "analyze_hyperlink": True})
doc = {
"docnm_kwd": filename,
"title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename))
}
doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
res = []
pdf_parser = None
section_images = None
is_root = kwargs.get("is_root", True)
embed_res = []
if is_root:
# Only extract embedded files at the root call
embeds = []
if binary is not None:
embeds = extract_embed_file(binary)
else:
raise Exception("Embedding extraction from file path is not supported.")
# Recursively chunk each embedded file and collect results
for embed_filename, embed_bytes in embeds:
try:
sub_res = chunk(embed_filename, binary=embed_bytes, lang=lang, callback=callback, vision_model=vision_model, is_root=False, **kwargs) or []
embed_res.extend(sub_res)
except Exception as e:
if callback:
callback(0.05, f"Failed to chunk embed {embed_filename}: {e}")
continue
if re.search(r"\.docx$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
if parser_config.get("analyze_hyperlink", False) and is_root:
urls = extract_links_from_docx(binary)
for index, url in enumerate(urls):
html_bytes, metadata = extract_html(url)
if not html_bytes:
continue
try:
sub_url_res = chunk(url, html_bytes, lang=lang, callback=callback, vision_model=vision_model, is_root=False, **kwargs)
except Exception as e:
logging.info(f"Failed to chunk url in registered file type {url}: {e}")
sub_url_res = chunk(f"{index}.html", html_bytes, lang=lang, callback=callback, vision_model=vision_model, is_root=False, **kwargs)
url_res.extend(sub_url_res)
# fix "There is no item named 'word/NULL' in the archive", referring to https://github.com/python-openxml/python-docx/issues/1105#issuecomment-1298075246
_SerializedRelationships.load_from_xml = load_from_xml_v2
sections, tables = Docx()(filename, binary)
tables=vision_figure_parser_docx_wrapper(sections=sections,tbls=tables,callback=callback, vision_model=vision_model, **kwargs)
res = tokenize_table(tables, doc, is_english)
callback(0.8, "Finish parsing.")
st = timer()
chunks, images = naive_merge_docx(
sections, int(parser_config.get(
"chunk_token_num", 128)), parser_config.get(
"delimiter", "\n!?。;!?"))
if kwargs.get("section_only", False):
chunks.extend(embed_res)
chunks.extend(url_res)
return chunks
res.extend(tokenize_chunks_with_images(chunks, doc, is_english, images))
logging.info("naive_merge({}): {}".format(filename, timer() - st))
res.extend(embed_res)
res.extend(url_res)
return res
elif re.search(r"\.pdf$", filename, re.IGNORECASE):
layout_recognizer = parser_config.get("layout_recognize", "DeepDOC")
if parser_config.get("analyze_hyperlink", False) and is_root:
urls = extract_links_from_pdf(binary)
if isinstance(layout_recognizer, bool):
layout_recognizer = "DeepDOC" if layout_recognizer else "Plain Text"
name = layout_recognizer.strip().lower()
parser = PARSERS.get(name, by_plaintext)
callback(0.1, "Start to parse.")
sections, tables, pdf_parser = parser(
filename=filename,
binary=binary,
from_page=from_page,
to_page=to_page,
lang=lang,
callback=callback,
vision_model=vision_model,
layout_recognizer=layout_recognizer,
**kwargs
)
if not sections and not tables:
return []
if name in ["mineru", "textln"]:
parser_config["chunk_token_num"] = 0
res = tokenize_table(tables, doc, is_english)
callback(0.8, "Finish parsing.")
elif re.search(r"\.pptx?$", filename, re.IGNORECASE):
if not binary:
with open(filename, "rb") as f:
binary = f.read()
from app.core.rag.app.presentation import Ppt
ppt_parser = Ppt()
for pn, (txt, img) in enumerate(ppt_parser(
filename if not binary else binary, from_page, to_page, callback)):
d = copy.deepcopy(doc)
pn += from_page
d["image"] = img
d["doc_type_kwd"] = "image"
d["page_num_int"] = [pn + 1]
d["top_int"] = [0]
d["position_int"] = [(pn + 1, 0, img.size[0], 0, img.size[1])]
tokenize(d, txt, is_english)
res.append(d)
return res
elif re.search(r"\.(da|wave|wav|mp3|aac|flac|ogg|aiff|au|midi|wma|realaudio|vqf|oggvorbis|ape?)$", filename, re.IGNORECASE):
if not binary:
with open(filename, "rb") as f:
binary = f.read()
from app.core.rag.app.audio import chunk as parser
return parser(filename, binary, lang=lang, callback=callback, seq2txt_mdl=vision_model, **kwargs)
elif re.search(r"\.(png|jpeg|jpg|gif|bmp|svg|mp4|mov|avi|flv|mpeg|mpg|webm|wmv|3gp|3gpp|mkv?)$", filename, re.IGNORECASE):
if not binary:
with open(filename, "rb") as f:
binary = f.read()
from app.core.rag.app.picture import chunk as parser
return parser(filename, binary, lang=lang, callback=callback, vision_model=vision_model, **kwargs)
elif re.search(r"\.(csv|xlsx?)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
if not binary:
with open(filename, "rb") as f:
binary = f.read()
excel_parser = ExcelParser()
if parser_config.get("html4excel"):
sections = [(_, "") for _ in excel_parser.html(binary, 12) if _]
else:
sections = [(_, "") for _ in excel_parser(binary) if _]
parser_config["chunk_token_num"] = 12800
elif re.search(r"\.(txt|py|js|java|c|cpp|h|php|go|ts|sh|cs|kt|sql)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
sections = TxtParser()(filename, binary,
parser_config.get("chunk_token_num", 128),
parser_config.get("delimiter", "\n!?;。;!?"))
callback(0.8, "Finish parsing.")
elif re.search(r"\.(md|markdown)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
markdown_parser = Markdown(int(parser_config.get("chunk_token_num", 128)))
sections, tables = markdown_parser(filename, binary, separate_tables=False,delimiter=parser_config.get("delimiter", "\n!?;。;!?"))
if vision_model:
# Process images for each section
section_images = []
for idx, (section_text, _) in enumerate(sections):
images = markdown_parser.get_pictures(section_text) if section_text else None
if images:
# If multiple images found, combine them using concat_img
combined_image = reduce(concat_img, images) if len(images) > 1 else images[0]
section_images.append(combined_image)
markdown_vision_parser = VisionFigureParser(vision_model=vision_model, figures_data= [((combined_image, ["markdown image"]), [(0, 0, 0, 0, 0)])], **kwargs)
boosted_figures = markdown_vision_parser(callback=callback)
sections[idx] = (section_text + "\n\n" + "\n\n".join([fig[0][1][0] for fig in boosted_figures]), sections[idx][1])
else:
section_images.append(None)
else:
logging.warning("No visual model detected. Skipping figure parsing enhancement.")
if parser_config.get("hyperlink_urls", False) and is_root:
for idx, (section_text, _) in enumerate(sections):
soup = markdown_parser.md_to_html(section_text)
hyperlink_urls = markdown_parser.get_hyperlink_urls(soup)
urls.update(hyperlink_urls)
res = tokenize_table(tables, doc, is_english)
callback(0.8, "Finish parsing.")
elif re.search(r"\.(htm|html)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
chunk_token_num = int(parser_config.get("chunk_token_num", 128))
sections = HtmlParser()(filename, binary, chunk_token_num)
sections = [(_, "") for _ in sections if _]
callback(0.8, "Finish parsing.")
elif re.search(r"\.(json|jsonl|ldjson)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
chunk_token_num = int(parser_config.get("chunk_token_num", 128))
sections = JsonParser(chunk_token_num)(filename)
sections = [(_, "") for _ in sections if _]
callback(0.8, "Finish parsing.")
elif re.search(r"\.doc$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
try:
import tika
os.environ['TIKA_SERVER_JAR'] = "/tmp/tika-server.jar"
os.environ['TIKA_SERVER_PORT'] = '9998'
# java11 Initialize Tika 3.1.0.jar service urlhttp://localhost:9998 view processlsof -i :9998
tika.initVM()
from tika import parser as tika_parser
except Exception as e:
callback(0.8, f"tika not available: {e}. Unsupported .doc parsing.")
logging.warning(f"tika not available: {e}. Unsupported .doc parsing for {filename}.")
return []
doc_parsed = tika_parser.from_file(filename)
if doc_parsed.get('content', None) is not None:
sections = doc_parsed['content'].split('\n')
sections = [(_, "") for _ in sections if _]
callback(0.8, "Finish parsing.")
else:
callback(0.8, f"tika.parser got empty content from {filename}.")
logging.warning(f"tika.parser got empty content from {filename}.")
return []
else:
raise NotImplementedError(
"file type not supported yet(pdf, xlsx, doc, docx, txt supported)")
st = timer()
if section_images:
# if all images are None, set section_images to None
if all(image is None for image in section_images):
section_images = None
if section_images:
chunks, images = naive_merge_with_images(sections, section_images,
int(parser_config.get(
"chunk_token_num", 128)), parser_config.get(
"delimiter", "\n!?。;!?"))
if kwargs.get("section_only", False):
chunks.extend(embed_res)
return chunks
res.extend(tokenize_chunks_with_images(chunks, doc, is_english, images))
else:
chunks = naive_merge(
sections, int(parser_config.get(
"chunk_token_num", 128)), parser_config.get(
"delimiter", "\n!?。;!?"))
if kwargs.get("section_only", False):
chunks.extend(embed_res)
return chunks
res.extend(tokenize_chunks(chunks, doc, is_english, pdf_parser))
if urls and parser_config.get("analyze_hyperlink", False) and is_root:
for index, url in enumerate(urls):
html_bytes, metadata = extract_html(url)
if not html_bytes:
continue
try:
sub_url_res = chunk(url, html_bytes, callback=callback, lang=lang, is_root=False, **kwargs)
except Exception as e:
logging.info(f"Failed to chunk url in registered file type {url}: {e}")
sub_url_res = chunk(f"{index}.html", html_bytes, lang=lang, callback=callback, vision_model=vision_model, is_root=False, **kwargs)
url_res.extend(sub_url_res)
logging.info("naive_merge({}): {}".format(filename, timer() - st))
if embed_res:
res.extend(embed_res)
if url_res:
res.extend(url_res)
return res
if __name__ == "__main__":
# import sys
# chunk(sys.argv[1], from_page=0, to_page=10, callback=dummy)
# Prepare to configure vision_model information
vision_model = QWenCV(
key="sk-8e9e40cd171749858ce2d3722ea75669",
model_name="qwen-vl-max",
lang="chinese", # 默认使用中文
base_url="https://dashscope.aliyuncs.com/compatible-mode/v1"
)
def progress_callback(prog=None, msg=None):
print(f"prog: {prog} msg: {msg}\n")
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/1.txt"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/2.md"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/3.md" # 带图url
file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/义务教育教科书·中国历史七年级上册 (2)_Compressed.md"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/4.doc"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/5.json"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/6.html"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/7.xlsx"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/8.pdf"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/9.pptx"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/10.png"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/11.mp4"
# file_path = "/Users/sbtjfdn/Downloads/记忆科学/files/12.mp3"
res = chunk(filename=file_path,
from_page=0,
to_page=10,
callback=progress_callback,
vision_model=vision_model,
parser_config={
"layout_recognize": "DeepDOC",
"chunk_token_num": 128,
"delimiter": "\n",
"analyze_hyperlink": True,
"auto_keywords": 0,
"auto_questions": 0,
"html4excel": "false"
},
is_root=False)
for index, item in enumerate(res):
print(f"Index: {index}\n----")
print(item)
print("----")

149
api/app/core/rag/app/one.py Normal file
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import logging
from io import BytesIO
import re
from app.core.rag.deepdoc.parser.utils import get_text
from . import naive
from app.core.rag.nlp import rag_tokenizer, tokenize
from app.core.rag.deepdoc.parser import PdfParser, ExcelParser, HtmlParser
from app.core.rag.deepdoc.parser.figure_parser import vision_figure_parser_docx_wrapper
from app.core.rag.app.naive import by_plaintext, PARSERS
class Pdf(PdfParser):
def __call__(self, filename, binary=None, from_page=0,
to_page=100000, zoomin=3, callback=None):
from timeit import default_timer as timer
start = timer()
callback(msg="OCR started")
self.__images__(
filename if not binary else binary,
zoomin,
from_page,
to_page,
callback
)
callback(msg="OCR finished ({:.2f}s)".format(timer() - start))
start = timer()
self._layouts_rec(zoomin, drop=False)
callback(0.63, "Layout analysis ({:.2f}s)".format(timer() - start))
logging.debug("layouts cost: {}s".format(timer() - start))
start = timer()
self._table_transformer_job(zoomin)
callback(0.65, "Table analysis ({:.2f}s)".format(timer() - start))
start = timer()
self._text_merge()
callback(0.67, "Text merged ({:.2f}s)".format(timer() - start))
tbls = self._extract_table_figure(True, zoomin, True, True)
self._concat_downward()
sections = [(b["text"], self.get_position(b, zoomin))
for i, b in enumerate(self.boxes)]
return [(txt, "") for txt, _ in sorted(sections, key=lambda x: (
x[-1][0][0], x[-1][0][3], x[-1][0][1]))], tbls
def chunk(filename, binary=None, from_page=0, to_page=100000,
lang="Chinese", callback=None, **kwargs):
"""
Supported file formats are docx, pdf, excel, txt.
One file forms a chunk which maintains original text order.
"""
parser_config = kwargs.get(
"parser_config", {
"chunk_token_num": 512, "delimiter": "\n!?。;!?", "layout_recognize": "DeepDOC"})
eng = lang.lower() == "english" # is_english(cks)
if re.search(r"\.docx$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
sections, tbls = naive.Docx()(filename, binary)
tbls=vision_figure_parser_docx_wrapper(sections=sections,tbls=tbls,callback=callback,**kwargs)
sections = [s for s, _ in sections if s]
for (_, html), _ in tbls:
sections.append(html)
callback(0.8, "Finish parsing.")
elif re.search(r"\.pdf$", filename, re.IGNORECASE):
layout_recognizer = parser_config.get("layout_recognize", "DeepDOC")
if isinstance(layout_recognizer, bool):
layout_recognizer = "DeepDOC" if layout_recognizer else "Plain Text"
name = layout_recognizer.strip().lower()
parser = PARSERS.get(name, by_plaintext)
callback(0.1, "Start to parse.")
sections, tbls, pdf_parser = parser(
filename = filename,
binary = binary,
from_page = from_page,
to_page = to_page,
lang = lang,
callback = callback,
pdf_cls = Pdf,
**kwargs
)
if not sections and not tbls:
return []
if name in ["tcadp", "docling", "mineru"]:
parser_config["chunk_token_num"] = 0
callback(0.8, "Finish parsing.")
for (img, rows), poss in tbls:
if not rows:
continue
sections.append((rows if isinstance(rows, str) else rows[0],
[(p[0] + 1 - from_page, p[1], p[2], p[3], p[4]) for p in poss]))
sections = [s for s, _ in sections if s]
elif re.search(r"\.xlsx?$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
excel_parser = ExcelParser()
sections = excel_parser.html(binary, 1000000000)
elif re.search(r"\.(txt|md|markdown)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
txt = get_text(filename, binary)
sections = txt.split("\n")
sections = [s for s in sections if s]
callback(0.8, "Finish parsing.")
elif re.search(r"\.(htm|html)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
sections = HtmlParser()(filename, binary)
sections = [s for s in sections if s]
callback(0.8, "Finish parsing.")
elif re.search(r"\.doc$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
binary = BytesIO(binary)
doc_parsed = parser.from_buffer(binary)
sections = doc_parsed['content'].split('\n')
sections = [s for s in sections if s]
callback(0.8, "Finish parsing.")
else:
raise NotImplementedError(
"file type not supported yet(doc, docx, pdf, txt supported)")
doc = {
"docnm_kwd": filename,
"title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename))
}
doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
tokenize(doc, "\n".join(sections), eng)
return [doc]
if __name__ == "__main__":
import sys
def dummy(prog=None, msg=""):
pass
chunk(sys.argv[1], from_page=0, to_page=10, callback=dummy)

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import logging
import copy
import re
from app.core.rag.deepdoc.parser.figure_parser import vision_figure_parser_pdf_wrapper
from app.core.rag.common.constants import ParserType
from app.core.rag.nlp import rag_tokenizer, tokenize, tokenize_table, add_positions, bullets_category, title_frequency, tokenize_chunks
from app.core.rag.deepdoc.parser import PdfParser, PlainParser
import numpy as np
class Pdf(PdfParser):
def __init__(self):
self.model_speciess = ParserType.PAPER.value
super().__init__()
def __call__(self, filename, binary=None, from_page=0,
to_page=100000, zoomin=3, callback=None):
from timeit import default_timer as timer
start = timer()
callback(msg="OCR started")
self.__images__(
filename if not binary else binary,
zoomin,
from_page,
to_page,
callback
)
callback(msg="OCR finished ({:.2f}s)".format(timer() - start))
start = timer()
self._layouts_rec(zoomin)
callback(0.63, "Layout analysis ({:.2f}s)".format(timer() - start))
logging.debug(f"layouts cost: {timer() - start}s")
start = timer()
self._table_transformer_job(zoomin)
callback(0.68, "Table analysis ({:.2f}s)".format(timer() - start))
start = timer()
self._text_merge()
tbls = self._extract_table_figure(True, zoomin, True, True)
column_width = np.median([b["x1"] - b["x0"] for b in self.boxes])
self._concat_downward()
self._filter_forpages()
callback(0.75, "Text merged ({:.2f}s)".format(timer() - start))
# clean mess
if column_width < self.page_images[0].size[0] / zoomin / 2:
logging.debug("two_column................... {} {}".format(column_width,
self.page_images[0].size[0] / zoomin / 2))
self.boxes = self.sort_X_by_page(self.boxes, column_width / 2)
for b in self.boxes:
b["text"] = re.sub(r"([\t  ]|\u3000){2,}", " ", b["text"].strip())
def _begin(txt):
return re.match(
"[0-9. 一、i]*(introduction|abstract|摘要|引言|keywords|key words|关键词|background|背景|目录|前言|contents)",
txt.lower().strip())
if from_page > 0:
return {
"title": "",
"authors": "",
"abstract": "",
"sections": [(b["text"] + self._line_tag(b, zoomin), b.get("layoutno", "")) for b in self.boxes if
re.match(r"(text|title)", b.get("layoutno", "text"))],
"tables": tbls
}
# get title and authors
title = ""
authors = []
i = 0
while i < min(32, len(self.boxes)-1):
b = self.boxes[i]
i += 1
if b.get("layoutno", "").find("title") >= 0:
title = b["text"]
if _begin(title):
title = ""
break
for j in range(3):
if _begin(self.boxes[i + j]["text"]):
break
authors.append(self.boxes[i + j]["text"])
break
break
# get abstract
abstr = ""
i = 0
while i + 1 < min(32, len(self.boxes)):
b = self.boxes[i]
i += 1
txt = b["text"].lower().strip()
if re.match("(abstract|摘要)", txt):
if len(txt.split()) > 32 or len(txt) > 64:
abstr = txt + self._line_tag(b, zoomin)
break
txt = self.boxes[i]["text"].lower().strip()
if len(txt.split()) > 32 or len(txt) > 64:
abstr = txt + self._line_tag(self.boxes[i], zoomin)
i += 1
break
if not abstr:
i = 0
callback(
0.8, "Page {}~{}: Text merging finished".format(
from_page, min(
to_page, self.total_page)))
for b in self.boxes:
logging.debug("{} {}".format(b["text"], b.get("layoutno")))
logging.debug("{}".format(tbls))
return {
"title": title,
"authors": " ".join(authors),
"abstract": abstr,
"sections": [(b["text"] + self._line_tag(b, zoomin), b.get("layoutno", "")) for b in self.boxes[i:] if
re.match(r"(text|title)", b.get("layoutno", "text"))],
"tables": tbls
}
def chunk(filename, binary=None, from_page=0, to_page=100000,
lang="Chinese", callback=None, **kwargs):
"""
Only pdf is supported.
The abstract of the paper will be sliced as an entire chunk, and will not be sliced partly.
"""
parser_config = kwargs.get(
"parser_config", {
"chunk_token_num": 512, "delimiter": "\n!?。;!?", "layout_recognize": "DeepDOC"})
if re.search(r"\.pdf$", filename, re.IGNORECASE):
if parser_config.get("layout_recognize", "DeepDOC") == "Plain Text":
pdf_parser = PlainParser()
paper = {
"title": filename,
"authors": " ",
"abstract": "",
"sections": pdf_parser(filename if not binary else binary, from_page=from_page, to_page=to_page)[0],
"tables": []
}
else:
pdf_parser = Pdf()
paper = pdf_parser(filename if not binary else binary,
from_page=from_page, to_page=to_page, callback=callback)
tbls=paper["tables"]
tbls=vision_figure_parser_pdf_wrapper(tbls=tbls,callback=callback,**kwargs)
paper["tables"] = tbls
else:
raise NotImplementedError("file type not supported yet(pdf supported)")
doc = {"docnm_kwd": filename, "authors_tks": rag_tokenizer.tokenize(paper["authors"]),
"title_tks": rag_tokenizer.tokenize(paper["title"] if paper["title"] else filename)}
doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
doc["authors_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["authors_tks"])
# is it English
eng = lang.lower() == "english" # pdf_parser.is_english
logging.debug("It's English.....{}".format(eng))
res = tokenize_table(paper["tables"], doc, eng)
if paper["abstract"]:
d = copy.deepcopy(doc)
txt = pdf_parser.remove_tag(paper["abstract"])
d["important_kwd"] = ["abstract", "总结", "概括", "summary", "summarize"]
d["important_tks"] = " ".join(d["important_kwd"])
d["image"], poss = pdf_parser.crop(
paper["abstract"], need_position=True)
add_positions(d, poss)
tokenize(d, txt, eng)
res.append(d)
sorted_sections = paper["sections"]
# set pivot using the most frequent type of title,
# then merge between 2 pivot
bull = bullets_category([txt for txt, _ in sorted_sections])
most_level, levels = title_frequency(bull, sorted_sections)
assert len(sorted_sections) == len(levels)
sec_ids = []
sid = 0
for i, lvl in enumerate(levels):
if lvl <= most_level and i > 0 and lvl != levels[i - 1]:
sid += 1
sec_ids.append(sid)
logging.debug("{} {} {} {}".format(lvl, sorted_sections[i][0], most_level, sid))
chunks = []
last_sid = -2
for (txt, _), sec_id in zip(sorted_sections, sec_ids):
if sec_id == last_sid:
if chunks:
chunks[-1] += "\n" + txt
continue
chunks.append(txt)
last_sid = sec_id
res.extend(tokenize_chunks(chunks, doc, eng, pdf_parser))
return res
"""
readed = [0] * len(paper["lines"])
# find colon firstly
i = 0
while i + 1 < len(paper["lines"]):
txt = pdf_parser.remove_tag(paper["lines"][i][0])
j = i
if txt.strip("\n").strip()[-1] not in ":":
i += 1
continue
i += 1
while i < len(paper["lines"]) and not paper["lines"][i][0]:
i += 1
if i >= len(paper["lines"]): break
proj = [paper["lines"][i][0].strip()]
i += 1
while i < len(paper["lines"]) and paper["lines"][i][0].strip()[0] == proj[-1][0]:
proj.append(paper["lines"][i])
i += 1
for k in range(j, i): readed[k] = True
txt = txt[::-1]
if eng:
r = re.search(r"(.*?) ([\\.;?!]|$)", txt)
txt = r.group(1)[::-1] if r else txt[::-1]
else:
r = re.search(r"(.*?) ([。?;!]|$)", txt)
txt = r.group(1)[::-1] if r else txt[::-1]
for p in proj:
d = copy.deepcopy(doc)
txt += "\n" + pdf_parser.remove_tag(p)
d["image"], poss = pdf_parser.crop(p, need_position=True)
add_positions(d, poss)
tokenize(d, txt, eng)
res.append(d)
i = 0
chunk = []
tk_cnt = 0
def add_chunk():
nonlocal chunk, res, doc, pdf_parser, tk_cnt
d = copy.deepcopy(doc)
ck = "\n".join(chunk)
tokenize(d, pdf_parser.remove_tag(ck), pdf_parser.is_english)
d["image"], poss = pdf_parser.crop(ck, need_position=True)
add_positions(d, poss)
res.append(d)
chunk = []
tk_cnt = 0
while i < len(paper["lines"]):
if tk_cnt > 128:
add_chunk()
if readed[i]:
i += 1
continue
readed[i] = True
txt, layouts = paper["lines"][i]
txt_ = pdf_parser.remove_tag(txt)
i += 1
cnt = num_tokens_from_string(txt_)
if any([
layouts.find("title") >= 0 and chunk,
cnt + tk_cnt > 128 and tk_cnt > 32,
]):
add_chunk()
chunk = [txt]
tk_cnt = cnt
else:
chunk.append(txt)
tk_cnt += cnt
if chunk: add_chunk()
for i, d in enumerate(res):
print(d)
# d["image"].save(f"./logs/{i}.jpg")
return res
"""
if __name__ == "__main__":
import sys
def dummy(prog=None, msg=""):
pass
chunk(sys.argv[1], callback=dummy)

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import io
import re
import numpy as np
from PIL import Image
from app.core.rag.deepdoc.vision import OCR
from app.core.rag.nlp import rag_tokenizer, tokenize
from app.core.rag.common.string_utils import clean_markdown_block
ocr = OCR()
# Gemini supported MIME types
VIDEO_EXTS = [".mp4", ".mov", ".avi", ".flv", ".mpeg", ".mpg", ".webm", ".wmv", ".3gp", ".3gpp", ".mkv"]
def chunk(filename, binary, lang, callback=None, vision_model=None, **kwargs):
doc = {
"docnm_kwd": filename,
"title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename)),
}
eng = lang.lower() == "english"
if any(filename.lower().endswith(ext) for ext in VIDEO_EXTS):
try:
doc.update({"doc_type_kwd": "video"})
ans = vision_model.chat(system="", history=[], gen_conf={}, video_bytes=binary, filename=filename)
callback(0.8, "CV LLM respond: %s ..." % ans[:32])
ans += "\n" + ans
tokenize(doc, ans, eng)
return [doc]
except Exception as e:
callback(prog=-1, msg=str(e))
else:
img = Image.open(io.BytesIO(binary)).convert("RGB")
doc.update(
{
"image": img,
"doc_type_kwd": "image",
}
)
bxs = ocr(np.array(img))
txt = "\n".join([t[0] for _, t in bxs if t[0]])
callback(0.4, "Finish OCR: (%s ...)" % txt[:12])
if (eng and len(txt.split()) > 32) or len(txt) > 32:
tokenize(doc, txt, eng)
callback(0.8, "OCR results is too long to use CV LLM.")
return [doc]
try:
callback(0.4, "Use CV LLM to describe the picture.")
img_binary = io.BytesIO()
img.save(img_binary, format="JPEG")
img_binary.seek(0)
ans = vision_model.describe(img_binary.read())
callback(0.8, "CV LLM respond: %s ..." % ans[:32])
txt += "\n" + ans
tokenize(doc, txt, eng)
return [doc]
except Exception as e:
callback(prog=-1, msg=str(e))
return []
def vision_llm_chunk(binary, vision_model, prompt=None, callback=None):
"""
A simple wrapper to process image to markdown texts via VLM.
Returns:
Simple markdown texts generated by VLM.
"""
callback = callback or (lambda prog, msg: None)
img = binary
txt = ""
try:
with io.BytesIO() as img_binary:
try:
img.save(img_binary, format="JPEG")
except Exception:
img_binary.seek(0)
img_binary.truncate()
img.save(img_binary, format="PNG")
img_binary.seek(0)
description, token_count = vision_model.describe_with_prompt(img_binary.read(), prompt)
ans = clean_markdown_block(description)
txt += "\n" + ans
return txt
except Exception as e:
callback(-1, str(e))
return ""

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import copy
import re
from io import BytesIO
from PIL import Image
from app.core.rag.nlp import tokenize, is_english
from app.core.rag.nlp import rag_tokenizer
from app.core.rag.deepdoc.parser import PdfParser, PptParser, PlainParser
from PyPDF2 import PdfReader as pdf2_read
from app.core.rag.app.naive import by_plaintext, PARSERS
class Ppt(PptParser):
def __call__(self, fnm, from_page, to_page, callback=None):
txts = super().__call__(fnm, from_page, to_page)
callback(0.5, "Text extraction finished.")
import aspose.slides as slides
import aspose.pydrawing as drawing
imgs = []
with slides.Presentation(BytesIO(fnm)) as presentation:
for i, slide in enumerate(presentation.slides[from_page: to_page]):
try:
with BytesIO() as buffered:
slide.get_thumbnail(
0.1, 0.1).save(
buffered, drawing.imaging.ImageFormat.jpeg)
buffered.seek(0)
imgs.append(Image.open(buffered).copy())
except RuntimeError as e:
raise RuntimeError(f'ppt parse error at page {i+1}, original error: {str(e)}') from e
assert len(imgs) == len(
txts), "Slides text and image do not match: {} vs. {}".format(len(imgs), len(txts))
callback(0.9, "Image extraction finished")
self.is_english = is_english(txts)
return [(txts[i], imgs[i]) for i in range(len(txts))]
class Pdf(PdfParser):
def __init__(self):
super().__init__()
def __garbage(self, txt):
txt = txt.lower().strip()
if re.match(r"[0-9\.,%/-]+$", txt):
return True
if len(txt) < 3:
return True
return False
def __call__(self, filename, binary=None, from_page=0,
to_page=100000, zoomin=3, callback=None):
from timeit import default_timer as timer
start = timer()
callback(msg="OCR started")
self.__images__(filename if not binary else binary,
zoomin, from_page, to_page, callback)
callback(msg="Page {}~{}: OCR finished ({:.2f}s)".format(from_page, min(to_page, self.total_page), timer() - start))
assert len(self.boxes) == len(self.page_images), "{} vs. {}".format(
len(self.boxes), len(self.page_images))
res = []
for i in range(len(self.boxes)):
lines = "\n".join([b["text"] for b in self.boxes[i]
if not self.__garbage(b["text"])])
res.append((lines, self.page_images[i]))
callback(0.9, "Page {}~{}: Parsing finished".format(
from_page, min(to_page, self.total_page)))
return res, []
class PlainPdf(PlainParser):
def __call__(self, filename, binary=None, from_page=0,
to_page=100000, callback=None, **kwargs):
self.pdf = pdf2_read(filename if not binary else BytesIO(binary))
page_txt = []
for page in self.pdf.pages[from_page: to_page]:
page_txt.append(page.extract_text())
callback(0.9, "Parsing finished")
return [(txt, None) for txt in page_txt], []
def chunk(filename, binary=None, from_page=0, to_page=100000,
lang="Chinese", callback=None, vision_model=None, parser_config=None, **kwargs):
"""
The supported file formats are pdf, pptx.
Every page will be treated as a chunk. And the thumbnail of every page will be stored.
PPT file will be parsed by using this method automatically, setting-up for every PPT file is not necessary.
"""
if parser_config is None:
parser_config = {}
eng = lang.lower() == "english"
doc = {
"docnm_kwd": filename,
"title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename))
}
doc["title_sm_tks"] = rag_tokenizer.fine_grained_tokenize(doc["title_tks"])
res = []
if re.search(r"\.pptx?$", filename, re.IGNORECASE):
if not binary:
with open(filename, "rb") as f:
binary = f.read()
ppt_parser = Ppt()
for pn, (txt, img) in enumerate(ppt_parser(
filename if not binary else binary, from_page, 1000000, callback)):
d = copy.deepcopy(doc)
pn += from_page
d["image"] = img
d["doc_type_kwd"] = "image"
d["page_num_int"] = [pn + 1]
d["top_int"] = [0]
d["position_int"] = [(pn + 1, 0, img.size[0], 0, img.size[1])]
tokenize(d, txt, eng)
res.append(d)
return res
elif re.search(r"\.pdf$", filename, re.IGNORECASE):
layout_recognizer = parser_config.get("layout_recognize", "DeepDOC")
if isinstance(layout_recognizer, bool):
layout_recognizer = "DeepDOC" if layout_recognizer else "Plain Text"
name = layout_recognizer.strip().lower()
parser = PARSERS.get(name, by_plaintext)
callback(0.1, "Start to parse.")
sections, _, _ = parser(
filename=filename,
binary=binary,
from_page=from_page,
to_page=to_page,
lang=lang,
callback=callback,
vision_model=vision_model,
pdf_cls=Pdf,
**kwargs
)
if not sections:
return []
if name in ["tcadp", "docling", "mineru"]:
parser_config["chunk_token_num"] = 0
callback(0.8, "Finish parsing.")
for pn, (txt, img) in enumerate(sections):
d = copy.deepcopy(doc)
pn += from_page
if img:
d["image"] = img
d["page_num_int"] = [pn + 1]
d["top_int"] = [0]
d["position_int"] = [(pn + 1, 0, img.size[0] if img else 0, 0, img.size[1] if img else 0)]
tokenize(d, txt, eng)
res.append(d)
return res
raise NotImplementedError(
"file type not supported yet(pptx, pdf supported)")
if __name__ == "__main__":
import sys
def dummy(a, b):
pass
chunk(sys.argv[1], callback=dummy)

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api/app/core/rag/app/qa.py Normal file
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import logging
import re
import csv
from copy import deepcopy
from io import BytesIO
from timeit import default_timer as timer
from openpyxl import load_workbook
from app.core.rag.deepdoc.parser.utils import get_text
from app.core.rag.nlp import is_english, random_choices, qbullets_category, add_positions, has_qbullet, docx_question_level
from app.core.rag.nlp import rag_tokenizer, tokenize_table, concat_img
from app.core.rag.deepdoc.parser import PdfParser, ExcelParser, DocxParser
from docx import Document
from PIL import Image
from markdown import markdown
from app.core.rag.common.float_utils import get_float
class Excel(ExcelParser):
def __call__(self, fnm, binary=None, callback=None):
if not binary:
wb = load_workbook(fnm)
else:
wb = load_workbook(BytesIO(binary))
total = 0
for sheetname in wb.sheetnames:
total += len(list(wb[sheetname].rows))
res, fails = [], []
for sheetname in wb.sheetnames:
ws = wb[sheetname]
rows = list(ws.rows)
for i, r in enumerate(rows):
q, a = "", ""
for cell in r:
if not cell.value:
continue
if not q:
q = str(cell.value)
elif not a:
a = str(cell.value)
else:
break
if q and a:
res.append((q, a))
else:
fails.append(str(i + 1))
if len(res) % 999 == 0:
callback(len(res) *
0.6 /
total, ("Extract pairs: {}".format(len(res)) +
(f"{len(fails)} failure, line: %s..." %
(",".join(fails[:3])) if fails else "")))
callback(0.6, ("Extract pairs: {}. ".format(len(res)) + (
f"{len(fails)} failure, line: %s..." % (",".join(fails[:3])) if fails else "")))
self.is_english = is_english(
[rmPrefix(q) for q, _ in random_choices(res, k=30) if len(q) > 1])
return res
class Pdf(PdfParser):
def __call__(self, filename, binary=None, from_page=0,
to_page=100000, zoomin=3, callback=None):
start = timer()
callback(msg="OCR started")
self.__images__(
filename if not binary else binary,
zoomin,
from_page,
to_page,
callback
)
callback(msg="OCR finished ({:.2f}s)".format(timer() - start))
logging.debug("OCR({}~{}): {:.2f}s".format(from_page, to_page, timer() - start))
start = timer()
self._layouts_rec(zoomin, drop=False)
callback(0.63, "Layout analysis ({:.2f}s)".format(timer() - start))
start = timer()
self._table_transformer_job(zoomin)
callback(0.65, "Table analysis ({:.2f}s)".format(timer() - start))
start = timer()
self._text_merge()
callback(0.67, "Text merged ({:.2f}s)".format(timer() - start))
tbls = self._extract_table_figure(True, zoomin, True, True)
#self._naive_vertical_merge()
# self._concat_downward()
#self._filter_forpages()
logging.debug("layouts: {}".format(timer() - start))
sections = [b["text"] for b in self.boxes]
bull_x0_list = []
q_bull, reg = qbullets_category(sections)
if q_bull == -1:
raise ValueError("Unable to recognize Q&A structure.")
qai_list = []
last_q, last_a, last_tag = '', '', ''
last_index = -1
last_box = {'text':''}
last_bull = None
def sort_key(element):
tbls_pn = element[1][0][0]
tbls_top = element[1][0][3]
return tbls_pn, tbls_top
tbls.sort(key=sort_key)
tbl_index = 0
last_pn, last_bottom = 0, 0
tbl_pn, tbl_left, tbl_right, tbl_top, tbl_bottom, tbl_tag, tbl_text = 1, 0, 0, 0, 0, '@@0\t0\t0\t0\t0##', ''
for box in self.boxes:
section, line_tag = box['text'], self._line_tag(box, zoomin)
has_bull, index = has_qbullet(reg, box, last_box, last_index, last_bull, bull_x0_list)
last_box, last_index, last_bull = box, index, has_bull
line_pn = get_float(line_tag.lstrip('@@').split('\t')[0])
line_top = get_float(line_tag.rstrip('##').split('\t')[3])
tbl_pn, tbl_left, tbl_right, tbl_top, tbl_bottom, tbl_tag, tbl_text = self.get_tbls_info(tbls, tbl_index)
if not has_bull: # No question bullet
if not last_q:
if tbl_pn < line_pn or (tbl_pn == line_pn and tbl_top <= line_top): # image passed
tbl_index += 1
continue
else:
sum_tag = line_tag
sum_section = section
while ((tbl_pn == last_pn and tbl_top>= last_bottom) or (tbl_pn > last_pn)) \
and ((tbl_pn == line_pn and tbl_top <= line_top) or (tbl_pn < line_pn)): # add image at the middle of current answer
sum_tag = f'{tbl_tag}{sum_tag}'
sum_section = f'{tbl_text}{sum_section}'
tbl_index += 1
tbl_pn, tbl_left, tbl_right, tbl_top, tbl_bottom, tbl_tag, tbl_text = self.get_tbls_info(tbls, tbl_index)
last_a = f'{last_a}{sum_section}'
last_tag = f'{last_tag}{sum_tag}'
else:
if last_q:
while ((tbl_pn == last_pn and tbl_top>= last_bottom) or (tbl_pn > last_pn)) \
and ((tbl_pn == line_pn and tbl_top <= line_top) or (tbl_pn < line_pn)): # add image at the end of last answer
last_tag = f'{last_tag}{tbl_tag}'
last_a = f'{last_a}{tbl_text}'
tbl_index += 1
tbl_pn, tbl_left, tbl_right, tbl_top, tbl_bottom, tbl_tag, tbl_text = self.get_tbls_info(tbls, tbl_index)
image, poss = self.crop(last_tag, need_position=True)
qai_list.append((last_q, last_a, image, poss))
last_q, last_a, last_tag = '', '', ''
last_q = has_bull.group()
_, end = has_bull.span()
last_a = section[end:]
last_tag = line_tag
last_bottom = float(line_tag.rstrip('##').split('\t')[4])
last_pn = line_pn
if last_q:
qai_list.append((last_q, last_a, *self.crop(last_tag, need_position=True)))
return qai_list, tbls
def get_tbls_info(self, tbls, tbl_index):
if tbl_index >= len(tbls):
return 1, 0, 0, 0, 0, '@@0\t0\t0\t0\t0##', ''
tbl_pn = tbls[tbl_index][1][0][0]+1
tbl_left = tbls[tbl_index][1][0][1]
tbl_right = tbls[tbl_index][1][0][2]
tbl_top = tbls[tbl_index][1][0][3]
tbl_bottom = tbls[tbl_index][1][0][4]
tbl_tag = "@@{}\t{:.1f}\t{:.1f}\t{:.1f}\t{:.1f}##" \
.format(tbl_pn, tbl_left, tbl_right, tbl_top, tbl_bottom)
_tbl_text = ''.join(tbls[tbl_index][0][1])
return tbl_pn, tbl_left, tbl_right, tbl_top, tbl_bottom, tbl_tag, _tbl_text
class Docx(DocxParser):
def __init__(self):
pass
def get_picture(self, document, paragraph):
img = paragraph._element.xpath('.//pic:pic')
if not img:
return None
img = img[0]
embed = img.xpath('.//a:blip/@r:embed')[0]
related_part = document.part.related_parts[embed]
image = related_part.image
image = Image.open(BytesIO(image.blob)).convert('RGB')
return image
def __call__(self, filename, binary=None, from_page=0, to_page=100000, callback=None):
self.doc = Document(
filename) if not binary else Document(BytesIO(binary))
pn = 0
last_answer, last_image = "", None
question_stack, level_stack = [], []
qai_list = []
for p in self.doc.paragraphs:
if pn > to_page:
break
question_level, p_text = 0, ''
if from_page <= pn < to_page and p.text.strip():
question_level, p_text = docx_question_level(p)
if not question_level or question_level > 6: # not a question
last_answer = f'{last_answer}\n{p_text}'
current_image = self.get_picture(self.doc, p)
last_image = concat_img(last_image, current_image)
else: # is a question
if last_answer or last_image:
sum_question = '\n'.join(question_stack)
if sum_question:
qai_list.append((sum_question, last_answer, last_image))
last_answer, last_image = '', None
i = question_level
while question_stack and i <= level_stack[-1]:
question_stack.pop()
level_stack.pop()
question_stack.append(p_text)
level_stack.append(question_level)
for run in p.runs:
if 'lastRenderedPageBreak' in run._element.xml:
pn += 1
continue
if 'w:br' in run._element.xml and 'type="page"' in run._element.xml:
pn += 1
if last_answer:
sum_question = '\n'.join(question_stack)
if sum_question:
qai_list.append((sum_question, last_answer, last_image))
tbls = []
for tb in self.doc.tables:
html= "<table>"
for r in tb.rows:
html += "<tr>"
i = 0
while i < len(r.cells):
span = 1
c = r.cells[i]
for j in range(i+1, len(r.cells)):
if c.text == r.cells[j].text:
span += 1
i = j
i += 1
html += f"<td>{c.text}</td>" if span == 1 else f"<td colspan='{span}'>{c.text}</td>"
html += "</tr>"
html += "</table>"
tbls.append(((None, html), ""))
return qai_list, tbls
def rmPrefix(txt):
return re.sub(
r"^(问题|答案|回答|user|assistant|Q|A|Question|Answer|问|答)[\t: ]+", "", txt.strip(), flags=re.IGNORECASE)
def beAdocPdf(d, q, a, eng, image, poss):
qprefix = "Question: " if eng else "问题:"
aprefix = "Answer: " if eng else "回答:"
d["content_with_weight"] = "\t".join(
[qprefix + rmPrefix(q), aprefix + rmPrefix(a)])
d["content_ltks"] = rag_tokenizer.tokenize(q)
d["content_sm_ltks"] = rag_tokenizer.fine_grained_tokenize(d["content_ltks"])
if image:
d["image"] = image
d["doc_type_kwd"] = "image"
add_positions(d, poss)
return d
def beAdocDocx(d, q, a, eng, image, row_num=-1):
qprefix = "Question: " if eng else "问题:"
aprefix = "Answer: " if eng else "回答:"
d["content_with_weight"] = "\t".join(
[qprefix + rmPrefix(q), aprefix + rmPrefix(a)])
d["content_ltks"] = rag_tokenizer.tokenize(q)
d["content_sm_ltks"] = rag_tokenizer.fine_grained_tokenize(d["content_ltks"])
if image:
d["image"] = image
d["doc_type_kwd"] = "image"
if row_num >= 0:
d["top_int"] = [row_num]
return d
def beAdoc(d, q, a, eng, row_num=-1):
qprefix = "Question: " if eng else "问题:"
aprefix = "Answer: " if eng else "回答:"
d["content_with_weight"] = "\t".join(
[qprefix + rmPrefix(q), aprefix + rmPrefix(a)])
d["content_ltks"] = rag_tokenizer.tokenize(q)
d["content_sm_ltks"] = rag_tokenizer.fine_grained_tokenize(d["content_ltks"])
if row_num >= 0:
d["top_int"] = [row_num]
return d
def mdQuestionLevel(s):
match = re.match(r'#*', s)
return (len(match.group(0)), s.lstrip('#').lstrip()) if match else (0, s)
def chunk(filename, binary=None, from_page=0, to_page=100000, lang="Chinese", callback=None, **kwargs):
"""
Excel and csv(txt) format files are supported.
If the file is in excel format, there should be 2 column question and answer without header.
And question column is ahead of answer column.
And it's O.K if it has multiple sheets as long as the columns are rightly composed.
If it's in csv format, it should be UTF-8 encoded. Use TAB as delimiter to separate question and answer.
All the deformed lines will be ignored.
Every pair of Q&A will be treated as a chunk.
"""
eng = lang.lower() == "english"
res = []
doc = {
"docnm_kwd": filename,
"title_tks": rag_tokenizer.tokenize(re.sub(r"\.[a-zA-Z]+$", "", filename))
}
if re.search(r"\.xlsx?$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
excel_parser = Excel()
for ii, (q, a) in enumerate(excel_parser(filename, binary, callback)):
res.append(beAdoc(deepcopy(doc), q, a, eng, ii))
return res
elif re.search(r"\.(txt)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
txt = get_text(filename, binary)
lines = txt.split("\n")
comma, tab = 0, 0
for line in lines:
if len(line.split(",")) == 2:
comma += 1
if len(line.split("\t")) == 2:
tab += 1
delimiter = "\t" if tab >= comma else ","
fails = []
question, answer = "", ""
i = 0
while i < len(lines):
arr = lines[i].split(delimiter)
if len(arr) != 2:
if question:
answer += "\n" + lines[i]
else:
fails.append(str(i+1))
elif len(arr) == 2:
if question and answer:
res.append(beAdoc(deepcopy(doc), question, answer, eng, i))
question, answer = arr
i += 1
if len(res) % 999 == 0:
callback(len(res) * 0.6 / len(lines), ("Extract Q&A: {}".format(len(res)) + (
f"{len(fails)} failure, line: %s..." % (",".join(fails[:3])) if fails else "")))
if question:
res.append(beAdoc(deepcopy(doc), question, answer, eng, len(lines)))
callback(0.6, ("Extract Q&A: {}".format(len(res)) + (
f"{len(fails)} failure, line: %s..." % (",".join(fails[:3])) if fails else "")))
return res
elif re.search(r"\.(csv)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
txt = get_text(filename, binary)
lines = txt.split("\n")
delimiter = "\t" if any("\t" in line for line in lines) else ","
fails = []
question, answer = "", ""
res = []
reader = csv.reader(lines, delimiter=delimiter)
for i, row in enumerate(reader):
if len(row) != 2:
if question:
answer += "\n" + lines[i]
else:
fails.append(str(i + 1))
elif len(row) == 2:
if question and answer:
res.append(beAdoc(deepcopy(doc), question, answer, eng, i))
question, answer = row
if len(res) % 999 == 0:
callback(len(res) * 0.6 / len(lines), ("Extract Q&A: {}".format(len(res)) + (
f"{len(fails)} failure, line: %s..." % (",".join(fails[:3])) if fails else "")))
if question:
res.append(beAdoc(deepcopy(doc), question, answer, eng, len(list(reader))))
callback(0.6, ("Extract Q&A: {}".format(len(res)) + (
f"{len(fails)} failure, line: %s..." % (",".join(fails[:3])) if fails else "")))
return res
elif re.search(r"\.pdf$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
pdf_parser = Pdf()
qai_list, tbls = pdf_parser(filename if not binary else binary,
from_page=from_page, to_page=to_page, callback=callback)
for q, a, image, poss in qai_list:
res.append(beAdocPdf(deepcopy(doc), q, a, eng, image, poss))
return res
elif re.search(r"\.(md|markdown)$", filename, re.IGNORECASE):
callback(0.1, "Start to parse.")
txt = get_text(filename, binary)
lines = txt.split("\n")
_last_question, last_answer = "", ""
question_stack, level_stack = [], []
code_block = False
for index, line in enumerate(lines):
if line.strip().startswith('```'):
code_block = not code_block
question_level, question = 0, ''
if not code_block:
question_level, question = mdQuestionLevel(line)
if not question_level or question_level > 6: # not a question
last_answer = f'{last_answer}\n{line}'
else: # is a question
if last_answer.strip():
sum_question = '\n'.join(question_stack)
if sum_question:
res.append(beAdoc(deepcopy(doc), sum_question, markdown(last_answer, extensions=['markdown.extensions.tables']), eng, index))
last_answer = ''
i = question_level
while question_stack and i <= level_stack[-1]:
question_stack.pop()
level_stack.pop()
question_stack.append(question)
level_stack.append(question_level)
if last_answer.strip():
sum_question = '\n'.join(question_stack)
if sum_question:
res.append(beAdoc(deepcopy(doc), sum_question, markdown(last_answer, extensions=['markdown.extensions.tables']), eng, index))
return res
elif re.search(r"\.docx$", filename, re.IGNORECASE):
docx_parser = Docx()
qai_list, tbls = docx_parser(filename, binary,
from_page=0, to_page=10000, callback=callback)
res = tokenize_table(tbls, doc, eng)
for i, (q, a, image) in enumerate(qai_list):
res.append(beAdocDocx(deepcopy(doc), q, a, eng, image, i))
return res
raise NotImplementedError(
"Excel, csv(txt), pdf, markdown and docx format files are supported.")
if __name__ == "__main__":
import sys
def dummy(prog=None, msg=""):
pass
chunk(sys.argv[1], from_page=0, to_page=10, callback=dummy)